Package index

Exploratory Analysis

Functions for exploring raw data, summarizing statistics, and visualizing key patterns.

cyt_anova()

ANOVA Analysis on Continuous Variables.

cyt_ttest()

Two Sample T-test Comparisons.

cyt_bp()

Boxplots for Continuous Variables with Optional Grouping

cyt_bp2()

Boxplot Function Enhanced for Specific Group Comparisons.

cyt_errbp()

Error-bar Plot

cyt_skku()

Distribution of the Data Set Shown by Skewness and Kurtosis.

cyt_volc()

Volcano plot

cyt_heatmap()

Heat Map

cyt_dualflashplot()

Dual-flashlight Plot

cyt_univariate()

Pairwise Univariate Tests Between Two Groups

cyt_univariate_multi()

Univariate Tests for Multi‑Level Categorical Predictors

cyt_violin()

Violin Plots for Continuous Variables with Optional Grouping

apply_scale()

Apply a scale transformation to numeric columns

adjust_p()

Adjust p-values using a specified method

Multivariate Analysis

Functions for deeper multivariate insights.

cyt_splsda()

Analyze data with Sparse Partial Least Squares Discriminant Analysis (sPLS-DA).

cyt_pca()

Analyze Data with Principal Component Analysis (PCA) for Cytokines.

cyt_mint_splsda()

Analyze data with Multivariate INTegration (MINT) Sparse Partial Least Squares Discriminant Analysis (sPLS-DA).

Machine Learning Methods

cyt_rf()

Run Random Forest Classification on Cytokine Data,

cyt_xgb()

Run XGBoost Classification on Cytokine Data.

Utility Functions

cyt_export()

Generic export function for Cytokine plots

Datasets

ExampleData1

Example Cytokine Profiling Data 1.

ExampleData2

Example Cytokine Profiling Data 2.

ExampleData3

Example Cytokine Profiling Data 3.

ExampleData4

Example Cytokine Profiling Data 4.

ExampleData5

Example Cytokine Profiling Data 5.