Package index • CytoProfile

Exploratory Analysis

Functions for exploring raw data, summarizing statistics, and visualizing key patterns.

cyt_anova(): ANOVA Analysis on Continuous Variables.
cyt_ttest(): Two Sample T-test Comparisons.
cyt_bp(): Boxplots for Overall Comparisons by Continuous Variables.
cyt_bp2(): Boxplot Function Enhanced for Specific Group Comparisons.
cyt_errbp(): Error-bar Plot.
cyt_skku(): Distribution of the Data Set Shown by Skewness and Kurtosis.
cyt_volc(): Volcano Plot.
cyt_heatmap(): Heat Map.
cyt_dualflashplot(): Dual-flashlight Plot.

Multivariate Analysis

Functions for deeper multivariate insights.

cyt_splsda(): Analyze data with Sparse Partial Least Squares Discriminant Analysis (sPLS-DA).
cyt_pca(): Analyze Data with Principal Component Analysis (PCA) for Cytokines.
cyt_mint_splsda(): Analyze data with Multivariate INTegration (MINT) Sparse Partial Least Squares Discriminant Analysis (sPLS-DA).

Machine Learning Methods

cyt_rf(): Run Random Forest Classification on Cytokine Data,
cyt_xgb(): Run XGBoost Classification on Cytokine Data.

Datasets

ExampleData1: Example Cytokine Profiling Data 1.
ExampleData2: Example Cytokine Profiling Data 2.
ExampleData3: Example Cytokine Profiling Data 3.
ExampleData4: Example Cytokine Profiling Data 4.
ExampleData5: Example Cytokine Profiling Data 5.